patch not producing ragtag.patch.fasta or apg file but gives no error mesg

[horvathdp]

scaffold.fasta has 517 gaps, and patch seems to run fine producing all files except the critical final files (ragtag.patch.fasta, ragtag.patch.asm, and ragtag.patch.agp). The patch.err file is empty.
The first psuedo chrm alignment with contigs from ragtag.patch.ctg.agp

Chr01g1_RagTag 1 959577 1 W seq00000000 1 959577 +
Chr01g1_RagTag 959578 959677 2 N 100 scaffold yes align_genus
Chr01g1_RagTag 959678 8058203 3 W seq00000001 1 7098526 +
Chr01g1_RagTag 8058204 8058303 4 N 100 scaffold yes align_genus
Chr01g1_RagTag 8058304 11772892 5 W seq00000002 1 3714589 +
Chr01g1_RagTag 11772893 11772992 6 N 100 scaffold yes align_genus
Chr01g1_RagTag 11772993 16690558 7 W seq00000003 1 4917566 +
Chr01g1_RagTag 16690559 16690658 8 N 100 scaffold yes align_genus
Chr01g1_RagTag 16690659 41811744 9 W seq00000004 1 25121086 +
Chr01g1_RagTag 41811745 41811844 10 N 100 scaffold yes align_genus
Chr01g1_RagTag 41811845 41907080 11 W seq00000005 1 95236 +

Thoughts as to why no final output files?

[horvathdp]

Ahhh! based on someone's similar comments, I went and read the stderr file, and it seems the program couldn't load minimap2 or nucmer (because I hadn't loaded those modules. My bad (I think). I am rerunning now.