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error when running PAGA #4
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Description
I used seurat3 object as input and got the following error:
> tmp <- PAGA(s1)
Error in py_call_impl(callable, dots$args, dots$keywords) :
Evaluation error: ValueError: Length mismatch: Expected axis has 0 elements, new values have 25339 elements
Detailed traceback:
File "/Users/xinli/miniconda3/lib/python3.7/site-packages/pandas/core/generic.py", line 5287, in __setattr__
return object.__setattr__(self, name, value)
File "pandas/_libs/properties.pyx", line 67, in pandas._libs.properties.AxisProperty.__set__
File "/Users/xinli/miniconda3/lib/python3.7/site-packages/pandas/core/generic.py", line 661, in _set_axis
self._data.set_axis(axis, labels)
File "/Users/xinli/miniconda3/lib/python3.7/site-packages/pandas/core/internals/managers.py", line 178, in set_axis
f"Length mismatch: Expected axis has {old_len} elements, new "
.
Called from: py_call_impl(callable, dots$args, dots$keywords)
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