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Merge pull request #207 from monarch-initiative/generate-pages-20260128-165131
📄 Regenerate pages and dashboard (2026-01-28)
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‎app/data.js‎

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@@ -20079,6 +20079,85 @@ window.searchData = [
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"causal_graph_edges": "0",
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"causal_graph_longest_path": "0"
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},
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{
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"name": "Sengers syndrome",
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"disease_id": "MONDO:0008922",
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"category": "Mendelian",
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"parents": [],
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"subtypes": [],
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"description": "Loss of functional AGK impairs lipid signaling activity attributed to mitochondrial acylglycerol kinase.\n",
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"pathophysiology": [
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"AGK loss of function disrupts lipid signaling",
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"TIM22 complex assembly defect",
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"Reduced TIM22-mediated import of inner-membrane carrier proteins",
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"Impaired mitochondrial one-carbon metabolism",
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"Disrupted mitochondrial phospholipid metabolism",
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"Oxidative phosphorylation deficiency"
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],
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"cell_types": [],
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"cell_type_ids": [],
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"biological_processes": [
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"phosphatidic acid metabolic process",
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"protein insertion into mitochondrial inner membrane",
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"one-carbon metabolic process",
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"phospholipid metabolic process",
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"oxidative phosphorylation"
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],
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"phenotypes": [
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"Hypertrophic cardiomyopathy",
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"Developmental cataract",
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"Myopathy",
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"Lactic acidosis",
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"Congestive heart failure",
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"Aplasia of the ovary"
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],
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"phenotype_categories": [
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"Cardiovascular",
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"Ophthalmologic",
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"Neuromuscular",
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"Metabolic",
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"Genitourinary"
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],
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"phenotype_ids": [
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"HP:0001639",
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"HP:0000519",
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"HP:0003198",
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"HP:0003128",
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"HP:0001635",
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"HP:0010463"
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],
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"frequencies": [
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"VERY_FREQUENT",
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"FREQUENT",
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"VERY_RARE"
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],
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"genes": [
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"AGK"
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],
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"treatments": [
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"Coenzyme Q10 supplementation",
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"Carnitine supplementation",
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"B vitamin supplementation",
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"ACE inhibitor therapy",
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"Cardiac transplantation",
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"Diuretic therapy",
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"Levosimendan infusion"
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],
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"environmental": [],
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"biochemical": [
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"Lactate",
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"N-terminal pro-brain natriuretic peptide (NT-proBNP)",
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"3-hydroxybutyrate"
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],
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"source_file": "Sengers_syndrome.yaml",
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"page_url": "../pages/disorders/Sengers_syndrome.html",
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"num_phenotypes": 6,
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"num_pathophysiology": 6,
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"num_genes": 1,
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"num_treatments": 7,
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"causal_graph_edges": "0",
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"causal_graph_longest_path": "0"
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},
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{
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"name": "Shigellosis",
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"disease_id": "MONDO:0019345",

‎dashboard/comparison.png‎

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‎dashboard/detail_7.png‎

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‎dashboard/detail_8.png‎

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‎dashboard/detail_9.png‎

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‎dashboard/index.html‎

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<div class="container">
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<header>
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<h1>QC Dashboard - Multi-File Comparison</h1>
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<p class="subtitle">277 files analyzed (sorted by compliance, lowest first)</p>
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<p class="subtitle">278 files analyzed (sorted by compliance, lowest first)</p>
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</header>
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<section class="summary-cards">
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<div class="card">
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<h3>Files Analyzed</h3>
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<div class="value">277</div>
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<div class="value">278</div>
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</div>
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<div class="card">
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<h3>Average Compliance</h3>
123-
<div class="value bad">66.9%</div>
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<div class="value bad">67.2%</div>
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</div>
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<div class="card">
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<h3>Total Checks</h3>
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<div class="value">9397/14037</div>
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<div class="value">9480/14107</div>
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</div>
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<div class="card">
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<h3>Total Violations</h3>
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<div class="value bad">178</div>
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<div class="value bad">175</div>
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</div>
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</section>
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@@ -164,14 +164,14 @@ <h3>#6: IgA_Nephropathy.yaml (41.2%)</h3>
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<h3>#7: Pheochromocytoma_Paraganglioma.yaml (41.2%)</h3>
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<img src="detail_6.png" alt="Detail for Pheochromocytoma_Paraganglioma.yaml">
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</div><div class="detail-card">
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<h3>#8: Von_Hippel-Lindau_Disease.yaml (41.2%)</h3>
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<img src="detail_7.png" alt="Detail for Von_Hippel-Lindau_Disease.yaml">
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<h3>#8: Generalized_Anxiety_Disorder.yaml (41.3%)</h3>
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<img src="detail_7.png" alt="Detail for Generalized_Anxiety_Disorder.yaml">
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</div><div class="detail-card">
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<h3>#9: Generalized_Anxiety_Disorder.yaml (41.3%)</h3>
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<img src="detail_8.png" alt="Detail for Generalized_Anxiety_Disorder.yaml">
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<h3>#9: Peripheral_Artery_Disease.yaml (41.5%)</h3>
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<img src="detail_8.png" alt="Detail for Peripheral_Artery_Disease.yaml">
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</div><div class="detail-card">
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<h3>#10: Peripheral_Artery_Disease.yaml (41.5%)</h3>
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<img src="detail_9.png" alt="Detail for Peripheral_Artery_Disease.yaml">
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<h3>#10: Medulloblastoma_WNT_Activated.yaml (41.9%)</h3>
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<img src="detail_9.png" alt="Detail for Medulloblastoma_WNT_Activated.yaml">
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</div>
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</div>
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</section>
@@ -234,25 +234,19 @@ <h2>All Files (Sorted by Priority)</h2>
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<td>21/51</td>
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<td>1</td>
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</tr><tr class="priority-row">
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<td><span class="priority-badge">#8</span> <code>Von_Hippel-Lindau_Disease.yaml</code></td>
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<td class="bad">41.2%</td>
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<td>50.8%</td>
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<td>21/51</td>
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<td>1</td>
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</tr><tr class="priority-row">
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<td><span class="priority-badge">#9</span> <code>Generalized_Anxiety_Disorder.yaml</code></td>
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<td><span class="priority-badge">#8</span> <code>Generalized_Anxiety_Disorder.yaml</code></td>
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<td class="bad">41.3%</td>
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<td>51.8%</td>
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<td>19/46</td>
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<td></td>
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</tr><tr class="priority-row">
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<td><span class="priority-badge">#10</span> <code>Peripheral_Artery_Disease.yaml</code></td>
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<td><span class="priority-badge">#9</span> <code>Peripheral_Artery_Disease.yaml</code></td>
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<td class="bad">41.5%</td>
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<td>51.7%</td>
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<td>17/41</td>
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<td></td>
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</tr><tr class="">
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<td><code>Medulloblastoma_WNT_Activated.yaml</code></td>
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</tr><tr class="priority-row">
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<td><span class="priority-badge">#10</span> <code>Medulloblastoma_WNT_Activated.yaml</code></td>
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<td class="bad">41.9%</td>
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<td>53.2%</td>
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<td>18/43</td>
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<td>54.4%</td>
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<td>20/45</td>
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<td>1</td>
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</tr><tr class="">
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<td><code>Myasthenia_Gravis.yaml</code></td>
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<td class="bad">44.4%</td>
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<td>55.4%</td>
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<td>24/54</td>
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<td>1</td>
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</tr><tr class="">
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<td><code>RET_Rearranged_NSCLC.yaml</code></td>
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<td class="bad">44.4%</td>
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<td>56.4%</td>
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<td>19/42</td>
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<td>1</td>
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</tr><tr class="">
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<td><code>Alzheimers_Disease.yaml</code></td>
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<td class="bad">45.2%</td>
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<td>55.3%</td>
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<td>19/42</td>
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<td>1</td>
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</tr><tr class="">
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<td><code>Hereditary_Breast_and_Ovarian_Cancer_Syndrome.yaml</code></td>
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<td class="bad">45.2%</td>
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<td>60.0%</td>
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<td>23/46</td>
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<td>1</td>
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</tr><tr class="">
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<td><code>Myasthenia_Gravis.yaml</code></td>
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<td class="bad">50.0%</td>
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<td>61.4%</td>
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<td>27/54</td>
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<td></td>
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</tr><tr class="">
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<td><code>Pemphigus_Vulgaris.yaml</code></td>
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<td class="bad">50.0%</td>
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<td>61.1%</td>
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<td>18/34</td>
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<td>1</td>
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</tr><tr class="">
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<td><code>Von_Hippel-Lindau_Disease.yaml</code></td>
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<td class="bad">52.9%</td>
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<td>63.5%</td>
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<td>27/51</td>
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<td></td>
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</tr><tr class="">
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<td><code>Giant_Cell_Arteritis.yaml</code></td>
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<td class="bad">53.1%</td>
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<td>67.3%</td>
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<td>26/46</td>
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<td>1</td>
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</tr><tr class="">
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<td><code>Alzheimers_Disease.yaml</code></td>
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<td class="bad">57.1%</td>
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<td>67.9%</td>
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<td>24/42</td>
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<td></td>
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</tr><tr class="">
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<td><code>Dermatomyositis.yaml</code></td>
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<td class="bad">57.1%</td>
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<td>100.0%</td>
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<td>66/67</td>
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<td></td>
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</tr><tr class="">
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<td><code>Sengers_syndrome.yaml</code></td>
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<td class="good">98.6%</td>
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<td>100.0%</td>
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<td>69/70</td>
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<td></td>
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</tr><tr class="">
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<td><code>Collagenous_Sprue.yaml</code></td>
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<td class="good">98.7%</td>
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</section>
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<footer>
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<p>Generated by <a href="https://github.com/linkml/linkml-data-qc">linkml-data-qc</a> on 2026-01-28 06:05</p>
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<p>Generated by <a href="https://github.com/linkml/linkml-data-qc">linkml-data-qc</a> on 2026-01-28 16:51</p>
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</footer>
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</div>
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</body>

‎dashboard/reports.json‎

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"total_populated": 21,
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"violations": 1
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},
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{
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"file": "Von_Hippel-Lindau_Disease.yaml",
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"global_compliance": 41.17647058823529,
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"weighted_compliance": 50.79365079365079,
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"total_checks": 51,
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"total_populated": 21,
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"violations": 1
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},
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{
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"file": "Generalized_Anxiety_Disorder.yaml",
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"global_compliance": 41.30434782608695,
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"total_populated": 20,
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"violations": 1
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},
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{
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"file": "Myasthenia_Gravis.yaml",
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"global_compliance": 44.44444444444444,
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"weighted_compliance": 55.44554455445545,
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"total_checks": 54,
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"total_populated": 24,
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"violations": 1
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},
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{
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"file": "RET_Rearranged_NSCLC.yaml",
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"global_compliance": 44.44444444444444,
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"total_populated": 19,
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"violations": 1
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},
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{
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"file": "Alzheimers_Disease.yaml",
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"global_compliance": 45.23809523809524,
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"weighted_compliance": 55.34591194968554,
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"total_checks": 42,
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"total_populated": 19,
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"violations": 1
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},
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{
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"file": "Hereditary_Breast_and_Ovarian_Cancer_Syndrome.yaml",
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"global_compliance": 45.23809523809524,
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"total_populated": 23,
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"violations": 1
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},
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{
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"file": "Myasthenia_Gravis.yaml",
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"global_compliance": 50.0,
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"weighted_compliance": 61.386138613861384,
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"total_checks": 54,
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"total_populated": 27,
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"violations": 0
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},
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{
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"file": "Pemphigus_Vulgaris.yaml",
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"global_compliance": 50.0,
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"total_populated": 18,
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"violations": 1
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},
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{
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"file": "Von_Hippel-Lindau_Disease.yaml",
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"global_compliance": 52.94117647058824,
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"weighted_compliance": 63.49206349206349,
902+
"total_checks": 51,
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"total_populated": 27,
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"violations": 0
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},
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{
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"file": "Giant_Cell_Arteritis.yaml",
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"global_compliance": 53.125,
@@ -1047,6 +1039,14 @@
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"total_populated": 26,
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"violations": 1
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},
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{
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"file": "Alzheimers_Disease.yaml",
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"global_compliance": 57.14285714285714,
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"weighted_compliance": 67.9245283018868,
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"total_checks": 42,
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"total_populated": 24,
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"violations": 0
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},
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{
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"file": "Dermatomyositis.yaml",
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"global_compliance": 57.14285714285714,
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"total_populated": 66,
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"violations": 0
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},
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{
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"file": "Sengers_syndrome.yaml",
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"global_compliance": 98.57142857142858,
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"weighted_compliance": 100.0,
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"total_checks": 70,
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"total_populated": 69,
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"violations": 0
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},
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{
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"file": "Collagenous_Sprue.yaml",
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"global_compliance": 98.7012987012987,

‎pages/disorders/ALK-Rearranged_Non-Small_Cell_Lung_Cancer.html‎

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<div class="mermaid-container">
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<pre class="mermaid">graph TD
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ALK_Gene_Rearrangement[&#34;ALK Gene Rearrangement&#34;]
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Constitutive_ALK_Signaling[&#34;Constitutive ALK Signaling&#34;]
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Oncogene_Addiction[&#34;Oncogene Addiction&#34;]
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ALK_Gene_Rearrangement[&#34;ALK Gene Rearrangement&#34;]
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ALK_Gene_Rearrangement --&gt; Constitutive_ALK_Signaling
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Constitutive_ALK_Signaling --&gt; Oncogene_Addiction
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style ALK_Gene_Rearrangement fill:#dbeafe
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style Constitutive_ALK_Signaling fill:#dbeafe
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style Oncogene_Addiction fill:#dbeafe
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style ALK_Gene_Rearrangement fill:#dbeafe</pre>
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style Oncogene_Addiction fill:#dbeafe</pre>
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</div>
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</div>
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