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    84 repositories

    • qMRI_MSPM_AgeFx

      Public
      qMRI multivariate SPM, age effect analysis code
      MATLAB
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Feb 7, 2026Feb 7, 2026

    • bidsme

      Public
      Flexible bidsificator for multimodal datasets
      dicomeegbidsniftimri-databrainvision
      Python
      •
      GNU General Public License v2.0
      •2•13•3•0•Updated Jan 28, 2026Jan 28, 2026

    • TractSpLearn

      Public
      Personalized detection of subtle white-matter abnormalities
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 22, 2026Jan 22, 2026

    • mprage-like

      Public
      Python & Matlab implementation of the MPRAGElike approach to compute pseudo T1w MPRAGE images from multi-contrast GRE images.
      MATLAB
      •
      Apache License 2.0
      •1•0•0•0•Updated Dec 15, 2025Dec 15, 2025

    • TissueW_Smoothing_demo

      Public
      Tissue weighted smoothing little demo
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 28, 2025Oct 28, 2025

    • hMRI-toolbox

      Public
      A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)
      MATLAB
      •
      GNU General Public License v2.0
      •44•0•0•0•Updated Aug 25, 2025Aug 25, 2025

    • BIDSme_containerisation

      Public
      Bringing BIDSme into a container, then NeuroDesk
      Jupyter Notebook
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Aug 25, 2025Aug 25, 2025

    • MRSI_reco

      Public
      Python
      •0•1•0•0•Updated Jul 2, 2025Jul 2, 2025

    • ESMRMB2025_LNRDTI

      Public
      Code associated with our ESMRMB2025 abstract on Lumbar Nerve Roots (LNR) diffusion tensor MRI (DTI).
      Python
      •0•0•0•0•Updated Jun 4, 2025Jun 4, 2025

    • TopUp_docker_Matlab

      Public
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Jun 3, 2025Jun 3, 2025

    • ESMRMB2025_ADNIclassif

      Public
      Code associated with our ESMRMB2025 abstract on classifying ADNI data (1.5T and 3T MRI)
      Python
      •0•0•0•0•Updated Jun 3, 2025Jun 3, 2025

    • ESMRMB2025_ContrastAdjustment

      Public
      Code associated with our ESMRMB2025 abstract on Contrast Adjustment for MR Images at 7T
      MATLAB
      •0•0•0•0•Updated May 27, 2025May 27, 2025

    • bidsme-template

      Public
      Template notebooks for bidsification with bidsme
      Jupyter Notebook
      •0•0•0•0•Updated Apr 23, 2025Apr 23, 2025

    • mpm_bids

      Public
      MATLAB
      •0•1•0•0•Updated Mar 5, 2025Mar 5, 2025

    • spm

      Public
      SPM (Statistical Parametric Mapping) 25 - Development Version
      MATLAB
      •
      GNU General Public License v2.0
      •49•0•0•0•Updated Feb 22, 2025Feb 22, 2025

    • USwLesion

      Public
      Unified Segmentation for lesioned brain
      MATLAB
      •5•3•8•0•Updated Jan 30, 2025Jan 30, 2025

    • BIDS_AgingData

      Public
      BIDSification of aging paper's processed data (Callaghan 2014) for public release
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•2•0•Updated Jan 16, 2025Jan 16, 2025

    • pyActigraphy

      Public
      Python-based open source package for actigraphy data analysis
      Python
      •
      GNU General Public License v3.0
      •32•0•0•0•Updated Aug 28, 2024Aug 28, 2024

    • MPM_VisualQC

      Public
      Visual QC for MPM data
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 19, 2024Jul 19, 2024

    • PETpro

      Public
      Automated pipeline to quantify bidsified PET dataset using Logan plot model
      MATLAB
      •0•1•0•0•Updated Jul 4, 2024Jul 4, 2024

    • bids-specification

      Public
      Brain Imaging Data Structure (BIDS) Specification
      Python
      •
      Creative Commons Attribution 4.0 International
      •193•0•0•0•Updated Apr 12, 2024Apr 12, 2024

    • NODDI_singularity

      Public
      Singularity containerized version of the NODDI toolbox.
      MATLAB
      •
      GNU General Public License v3.0
      •1•8•0•0•Updated Mar 26, 2024Mar 26, 2024

    • shamo

      Public
      A tool for electromagnetic modelling of the head and sensitivity analysis.
      eegsensitivitytdcs
      Python
      •
      GNU General Public License v3.0
      •1•7•0•1•Updated Mar 20, 2024Mar 20, 2024

    • OHBM2024_MMwMVML

      Public
      OHBM2024 Educational Course, Integrating multimodal data with multivariate and machine learning approaches.
      MIT License
      •0•0•0•0•Updated Nov 28, 2023Nov 28, 2023

    • bidsme_tutorial

      Public
      A set of tutorials for Bidsme usage
      Jupyter Notebook
      •0•0•0•0•Updated Nov 22, 2023Nov 22, 2023

    • Test_hMRI_processing

      Public
      Testing some functions and features from the hMRI toolbox
      MATLAB
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Oct 17, 2023Oct 17, 2023

    • hMRItbx_SampleDS_BIDS

      Public
      Bits of code to BIDS-ify the example data set from the hMRI toolbox
      MATLAB
      •
      GNU General Public License v3.0
      •1•0•5•1•Updated Sep 15, 2023Sep 15, 2023

    • bidsme_examples

      Public
      Example datasets for bidsme tool
      Python
      •0•0•0•0•Updated Aug 7, 2023Aug 7, 2023

    • hMRI-toolbox_redirect

      Public
      Redirecting SPM toolbox to another folder.
      MATLAB
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated May 16, 2023May 16, 2023

    • FASST

      Public
      FASST, aka. fMRI Artefact rejection and Sleep Scoring Toolbox, public distribution with the latest updates.
      MATLAB
      •
      Other
      •18•20•4•1•Updated Mar 5, 2023Mar 5, 2023