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    138 repositories

    • dsrclib

      Public
      C++
      •0•0•0•0•Updated Feb 6, 2026Feb 6, 2026

    • ai-training

      Public
      GenAI training
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Feb 6, 2026Feb 6, 2026

    • nbi-hpc

      Public
      SCSS
      •
      MIT License
      •0•0•1•0•Updated Jan 23, 2026Jan 23, 2026

    • datasciencegroup

      Public
      Scripts and docs from the datascienceatqib group
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•5•0•0•Updated Jan 21, 2026Jan 21, 2026

    • ARG-Sniper

      Public
      Benchmarking of AMR detection tools using shot-gun metagenomic datasets
      Python
      •
      Apache License 2.0
      •2•0•1•0•Updated Dec 16, 2025Dec 16, 2025

    • CoreSeq-samplesheet-validator

      Public
      Svelte
      •
      MIT License
      •0•0•0•1•Updated Dec 2, 2025Dec 2, 2025

    • metagenomics-workshop

      Public
      SCSS
      •
      MIT License
      •0•0•0•0•Updated Nov 28, 2025Nov 28, 2025

    • qimu

      Public
      Python
      •0•0•0•0•Updated Nov 27, 2025Nov 27, 2025

    • votuderep

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 31, 2025Oct 31, 2025

    • nim-abif

      Public
      parser for ABIF chromatograms for Nim projects
      Nim
      •
      MIT License
      •0•3•0•0•Updated Oct 26, 2025Oct 26, 2025

    • nf-ebame-virome

      Public
      Nextflow
      •0•0•0•0•Updated Oct 23, 2025Oct 23, 2025

    • hts-nim

      Public
      nim wrapper for htslib for parsing genomics data files
      Nim
      •
      MIT License
      •28•0•0•0•Updated Oct 23, 2025Oct 23, 2025

    • ebame-viromics

      Public
      Ebame workshop website, built by P2PU
      SCSS
      •
      MIT License
      •525•0•0•0•Updated Oct 18, 2025Oct 18, 2025

    • .github

      Public
      0•0•0•0•Updated Oct 2, 2025Oct 2, 2025

    • NBI-Slurm

      Public
      Experimental interface to slurm
      perl
      Perl
      •0•2•0•0•Updated Sep 12, 2025Sep 12, 2025

    • qib-jira

      Public
      Fetching records from QIB Cloud Jira to a local database
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 18, 2025Aug 18, 2025

    • bash-training

      Public
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Aug 13, 2025Aug 13, 2025

    • nf-ont-taxamap

      Public
      Taxonomic profiling ONT metagenomics reads using minimap2
      Nextflow
      •2•1•0•0•Updated Aug 13, 2025Aug 13, 2025

    • biocondor

      Public
      🦅 Retrieve, cache and search for bioconda packages and their descriptions
      Python
      •
      MIT License
      •1•0•0•0•Updated Aug 11, 2025Aug 11, 2025

    • reportoss

      Public
      Tools to create JOSS/JOSE publishing artifacts
      TeX
      •
      MIT License
      •23•0•0•0•Updated Jul 14, 2025Jul 14, 2025

    • socru

      Public
      Order and orientation of complete bacterial genomes
      bioinformaticsgenomicsassemblypython3bioinformatics-pipelinebacteriacompleteinfectious-diseaseslong-reads
      Python
      •
      GNU General Public License v3.0
      •7•29•5•1•Updated Jul 11, 2025Jul 11, 2025

    • n50

      Public
      Calculate N50 from FASTA and FASTX files
      C
      •
      MIT License
      •0•2•0•0•Updated Jul 10, 2025Jul 10, 2025

    • QuaTradis

      Public
      A pipeline to analyse transposon directed insertion-site sequencing
      Gnuplot
      •
      GNU General Public License v3.0
      •1•3•4•0•Updated Jul 1, 2025Jul 1, 2025

    • readfx

      Public
      SeqFu FASTX parser (klib)
      Nim
      •
      MIT License
      •3•0•0•0•Updated Jun 28, 2025Jun 28, 2025

    • amplikraken

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 26, 2025Jun 26, 2025

    • dnadotplot

      Public
      Bioinformatics tool for DNA Dot Plot [bioinformatics training]
      Rust
      •0•1•0•0•Updated Jun 24, 2025Jun 24, 2025

    • tutorial-demo

      Public
      CSS
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Jun 24, 2025Jun 24, 2025

    • senior_bioinf_aptitude_test_0525

      Public
      Shell
      •1•0•0•0•Updated Jun 20, 2025Jun 20, 2025

    • fastx-xs

      Public
      C
      •0•0•0•0•Updated Jun 12, 2025Jun 12, 2025

    • repo-stats

      Public
      Python
      •0•0•0•0•Updated Jun 12, 2025Jun 12, 2025