Repositories list

• TrackMate

  Public
  TrackMate is your buddy for your everyday tracking.

  image-analysisfiji-pluginsingle-particle-tracking

  Java

  •

  GNU General Public License v3.0

  •83•225•10•3•Updated Jan 28, 2026Jan 28, 2026

• TrackMate-Trackastra

  Public

  trackmate-sc/TrackMate-Trackastra’s past year of commit activity
  Trackastra integration as a tracker module in TrackMate.

  Java

  •

  GNU General Public License v3.0

  •0•2•0•0•Updated Dec 16, 2025Dec 16, 2025

• TrackMate-Spotiflow

  Public
  Spotiflow integration in TrackMate.

  Java

  •

  GNU General Public License v3.0

  •1•0•0•1•Updated Dec 16, 2025Dec 16, 2025

• TrackMate-YOLO

  Public

  trackmate-sc/TrackMate-YOLO’s past year of commit activity
  YOLO integration as a detector in TrackMate.

  Java

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 16, 2025Dec 16, 2025

• TrackMate-Cellpose

  Public
  Tentative Cellpose integration in TrackMate.

  Java

  •

  GNU Affero General Public License v3.0

  •5•9•3•0•Updated Dec 16, 2025Dec 16, 2025

• TrackMate-CTCRunner

  Public
  Batch measurements of the Cell-Tracking-Challenge metrics using TrackMate.

  Java

  •

  GNU Affero General Public License v3.0

  •1•2•2•0•Updated Nov 18, 2025Nov 18, 2025

• TrackMate-Weka

  Public
  Using a Weka classifier as detector for TrackMate.

  Java

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Nov 18, 2025Nov 18, 2025

• TrackMate-MorphoLibJ

  Public

  trackmate-sc/TrackMate-MorphoLibJ’s past year of commit activity
  TrackMate detector based on the watershed segmentation tool in the MorphoLibJ plugin.

  Java

  •

  GNU General Public License v3.0

  •0•3•0•1•Updated Nov 18, 2025Nov 18, 2025

• MaMuT

  Public
  The fiji plugin for Massive Annotation

  Java

  •

  GNU General Public License v3.0

  •6•6•1•1•Updated Nov 18, 2025Nov 18, 2025

• TrackMate-Geff

  Public

  trackmate-sc/TrackMate-Geff’s past year of commit activity
  Input / output of TrackMate files to GEFF

  Java

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Nov 18, 2025Nov 18, 2025

• TrackMate-StarDist

  Public
  StarDist detection as TrackMate detectors.

  Java

  •

  GNU General Public License v3.0

  •2•7•3•0•Updated Nov 18, 2025Nov 18, 2025

• TrackMate-Ilastik

  Public
  Using Ilastik pixel classifiers as detector for TrackMate.

  Java

  •

  GNU General Public License v3.0

  •1•1•0•1•Updated Nov 18, 2025Nov 18, 2025

• TrackMate-ExTrack

  Public
  Perform ExTrack computation in TrackMate.

  Java

  •

  GNU General Public License v3.0

  •0•0•2•0•Updated Nov 17, 2025Nov 17, 2025

• TrackMate-CSVImporter

  Public
  An importer for CSV files in TrackMate.

  trackingcsvimporter+ 1trackmate

  Java

  •

  GNU General Public License v3.0

  •0•2•2•0•Updated Nov 17, 2025Nov 17, 2025

• TrackMate-InTRACKtive

  Public
  TrackMate integration of the inTRACKtive track visualizer by the Royer lab.

  Java

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jul 30, 2025Jul 30, 2025

• TrackMate-Skeleton

  Public
  TrackMate module for skeletonization of tissue end points and tracking

  Java

  •

  GNU General Public License v3.0

  •1•1•1•0•Updated Aug 29, 2024Aug 29, 2024

• TrackMate-Pairing

  Public
  A Fiji plugin to pair two TrackMate files and extract statistics from pairs.

  Java

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jul 25, 2024Jul 25, 2024

• TrackMate-Kymograph

  Public
  Generate kymographs from lines between two tracks in TrackMate.

  Java

  •

  GNU General Public License v3.0

  •0•0•1•0•Updated Jul 22, 2024Jul 22, 2024

• TrackMate-Oneat

  Public
  TrackMate extension for oneat for verifying lineage trees

  Java

  •

  GNU General Public License v3.0

  •0•3•1•0•Updated Jul 2, 2024Jul 2, 2024

• DendriteDynamicsTracker

  Public
  A Fiji plugin to track the dynamics of dendrites in 2D time-lapse movies.

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •0•2•0•0•Updated Nov 5, 2023Nov 5, 2023

• TrackMate-examples

  Public
  A simple repository that shows how to extend TrackMate with your own modules.

  Java

  •

  GNU General Public License v3.0

  •9•2•0•0•Updated Feb 23, 2023Feb 23, 2023

• trackmate-core

  Public
  Core library for TrackMate applications. Ship basic data structures and algorithms.

  Java

  •

  MIT License

  •0•0•0•0•Updated Oct 1, 2022Oct 1, 2022

• .github

  Public
  TrackMate organization profile

  The Unlicense

  •0•0•0•0•Updated Sep 7, 2022Sep 7, 2022

• MaMuT-tutorials

  Public
  Repository for the source files used to generate the MaMuT tutorials, following Tobias Pietzsch architecture.

  TeX

  •0•0•0•0•Updated Nov 14, 2016Nov 14, 2016