Error occurred when mapping the protein sequence to the structure database #16
Description
spacedust aa2foldseek setDB refFoldseekDB tmpFolder --threads 2
When I was mapping Alphafold database of test protein sequences, the program was always being terminated.
Despite trying various methods to reduce the memory requirements, reserving 2TB of space, reducing sequences and setting the number of threads to 2, the error still occurred. Would you like to help me solve the above error? Looking forward to your reply.
Query database size: 8 type: Aminoacid
Estimated memory consumption: 560G
Target database size: 241070489 type: Aminoacid
Index table k-mer threshold: 0 at k-mer size 7
Index table: counting k-mers
[=================================================================] 100.00% 241.07M 3h 28m 5s 93ms
Index table: Masked residues: 1225227637
Index table: fill
Killed ] 0.00% 1 eta -
Error: Prefilter died