replace with function calls

frederic-mahe · frederic-mahe · commit c9a9b892e6d2 · 2025-07-01T21:27:28.000+02:00
diff --git a/src/chimera.cc b/src/chimera.cc
@@ -309,8 +309,8 @@ auto find_matches(struct chimera_info_s * ci) -> void
             case 'M':
               for (int k = 0; k < run; ++k)
                 {
-                  if ((chrmap_4bit[(int) (qseq[qpos])] &
-                       chrmap_4bit[(int) (tseq[tpos])]) != 0U)
+                  if ((map_4bit(qseq[qpos]) &
+                       map_4bit(tseq[tpos])) != 0U)
                     {
                       ci->match[(i * ci->query_len) + qpos] = 1;
                     }

Original file line number	Diff line number	Diff line change
`@@ -309,8 +309,8 @@ auto find_matches(struct chimera_info_s * ci) -> void`
`309`	`309`	`case 'M':`
`310`	`310`	`for (int k = 0; k < run; ++k)`
`311`	`311`	`{`
`312`		`- if ((chrmap_4bit[(int) (qseq[qpos])] &`
`313`		`- chrmap_4bit[(int) (tseq[tpos])]) != 0U)`
	`312`	`+ if ((map_4bit(qseq[qpos]) &`
	`313`	`+ map_4bit(tseq[tpos])) != 0U)`
`314`	`314`	`{`
`315`	`315`	`ci->match[(i * ci->query_len) + qpos] = 1;`
`316`	`316`	`}`