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How to choose the parameter of loss_mode in sct.train.Trainer()

Status: Open.

#25 In LiQian-XC/sctour;

· fuc-001 opened on Dec 19, 2025

Velocity direction appears reversed compared to known biological trajectory

Status: Open.

#24 In LiQian-XC/sctour;

· lexie-lee opened on Nov 7, 2025

how many highly variable genes should i choose

Status: Open.

#23 In LiQian-XC/sctour;

· seekning opened on Sep 10, 2025

ValueError: cannot reshape array of size 3000 into shape (2,10,10)

Status: Open.

#20 In LiQian-XC/sctour;

· lemondll opened on Jul 1, 2025

tnode.train() error

Status: Open.

#19 In LiQian-XC/sctour;

· sunhuaibo opened on Mar 31, 2025

cannot specify integer <code>bins</code> when input data contains infinity

Status: Open.

#18 In LiQian-XC/sctour;

· OUMIAOXAIN opened on Mar 21, 2025

Visible batch effect on latent space and pseudotime

Status: Open.

#17 In LiQian-XC/sctour;

· CanacR opened on Feb 12, 2025

Fig6e code help!

Status: Open.

#13 In LiQian-XC/sctour;

· wuxiangning opened on Sep 25, 2024

ValueError: Invalid expression matrix in .X. nb mode expects raw UMI counts in .X of the AnnData."

Status: Open.

#12 In LiQian-XC/sctour;

· wuxiangning opened on Sep 21, 2024

Invalid expression matrix

Status: Open.

#11 In LiQian-XC/sctour;

· gototry2000 opened on Jul 22, 2024

<code>.X</code>. error using sct.train.Trainer()

Status: Open.

#10 In LiQian-XC/sctour;

· pandaqiuqiu opened on Jun 26, 2024

Depends on scikit-misc?

Status: Open.

#8 In LiQian-XC/sctour;

· bbimber opened on Feb 7, 2024