Name	Name	Last commit message	Last commit date
Latest commit History 11 Commits
ATAC-analysis	ATAC-analysis
Bcell-mock-RICC	Bcell-mock-RICC
ChIP-analysis	ChIP-analysis
CscoreTool	CscoreTool
MicroC-analysis	MicroC-analysis
R-repo	R-repo
RADICL-analysis	RADICL-analysis
RICC-analysis	RICC-analysis
__pycache__	__pycache__
old	old
211207_demultiplex_Hera_211206_VL00112_70_AAANVKTM5.sh	211207_demultiplex_Hera_211206_VL00112_70_AAANVKTM5.sh
BamtoBigWig.sh	BamtoBigWig.sh
Computational_Methods_Manuscript_Sept_final.Rmd	Computational_Methods_Manuscript_Sept_final.Rmd
Manuscript_methods_bash_scripts_September_2020.txt	Manuscript_methods_bash_scripts_September_2020.txt
PE_filter_UMI.slurm	PE_filter_UMI.slurm
README.md	README.md
RNA-bam2bigwig.sh	RNA-bam2bigwig.sh
RNA-seq-from-featurecounts-will.Rmd	RNA-seq-from-featurecounts-will.Rmd
RNA-seq-from-featurecounts-yus.Rmd	RNA-seq-from-featurecounts-yus.Rmd
RNA-seq-from-featurecounts.Rmd	RNA-seq-from-featurecounts.Rmd
RNA_seq_analysis_template_QC_Clustering_GOenrichment.Rmd	RNA_seq_analysis_template_QC_Clustering_GOenrichment.Rmd
STAR_PE_aligner.slurm	STAR_PE_aligner.slurm
TSS-APA.sh	TSS-APA.sh
TSS-TES-APA.sh	TSS-TES-APA.sh
annochunksizes.py	annochunksizes.py
diffHiC.R	diffHiC.R
diffcompartment-ATAC-plot.R	diffcompartment-ATAC-plot.R
diffcompartment-RNA-plot.R	diffcompartment-RNA-plot.R
genelength-plot.R	genelength-plot.R
gtf2bed.sh	gtf2bed.sh
hicrep.R	hicrep.R
histmark-peaks.sh	histmark-peaks.sh
intersect-genesofint.sh	intersect-genesofint.sh
loops-RNA-basemean-plot.R	loops-RNA-basemean-plot.R
loops-RNA-l2fc-plot.R	loops-RNA-l2fc-plot.R
mean-match-downsample.py	mean-match-downsample.py
novogene-namechange.sh	novogene-namechange.sh
pseudo_compare.slurm	pseudo_compare.slurm
pyMakeVplot_css_v01.py	pyMakeVplot_css_v01.py
smooth-metagene.py	smooth-metagene.py
sra2fastq.sh	sra2fastq.sh
visual_standard.py	visual_standard.py

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