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@d4straub d4straub commented Nov 11, 2025

Update nf-core modules with most recent versions.

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/detaxizer branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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@nf-core-bot fix linting

@d4straub d4straub marked this pull request as ready for review November 11, 2025 13:17
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@jfy133 jfy133 left a comment

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Looks fine, but I would highly recommend upstreaming the blastN meta.yml patch to the official module... that shouldn't be necessary to do at the pipeline (I'm happy to review this one too)

@jfy133 jfy133 self-requested a review November 11, 2025 14:09
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Thanks @jfy133 , PR is open: nf-core/modules#9384

@d4straub d4straub merged commit 5282f9b into nf-core:dev Nov 12, 2025
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@d4straub d4straub deleted the modules-update branch November 12, 2025 07:51
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3 participants