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Refactor main-nf -II #768

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Merged
ramprasadn merged 7 commits into from
Jan 22, 2026
Merged

Refactor main-nf -II #768

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586e6df
add channelFromPathWithIdOrDoubleEmpty
ramprasadn Jan 21, 2026
35af947
add channelFromPathWithMeta
ramprasadn Jan 21, 2026
7d68f5f
Merge branch 'refactor' into refactor2
ramprasadn Jan 21, 2026
1c7f0f4
Merge branch 'dev' of github.com:nf-core/raredisease into refactor2
ramprasadn Jan 22, 2026
3a21dc6
move all params to main workflow
ramprasadn Jan 22, 2026
db36ff4
add changelog
ramprasadn Jan 22, 2026
38b79b6
move functions to utils
ramprasadn Jan 22, 2026
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2 changes: 2 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -13,6 +13,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- Functionality to generate coverage information using Sambamba depth [#752](https://github.com/nf-core/raredisease/pull/752)
- Parameter to pass a file containing new sample ids to use with multiqc [#764](https://github.com/nf-core/raredisease/pull/764)
- A helper function channelFromPath to create channels in a readable fashion in main.nf [#766](https://github.com/nf-core/raredisease/pull/766)
- A helper function channelFromPathWithMeta to create channels in a readable fashion in main.nf [#767](https://github.com/nf-core/raredisease/pull/767)
- A helper function channelFromSamplesheet to create channels in a readable fashion in main.nf [#767](https://github.com/nf-core/raredisease/pull/767)

### `Changed`

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