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    81 repositories

    • distributions

      Public
      Makefile
      •
      BSD 3-Clause "New" or "Revised" License
      •11•5•6•7•Updated Feb 1, 2026Feb 1, 2026

    • library

      Public
      A website for sharing QIIME 2 Plugins
      Svelte
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•3•1•Updated Feb 1, 2026Feb 1, 2026

    • homepage

      Public
      QIIME 2 Homepage
      Astro
      •
      MIT License
      •0•0•0•0•Updated Jan 29, 2026Jan 29, 2026

    • q2templates

      Public
      Design template package for QIIME 2 Plugins
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •15•4•0•3•Updated Jan 29, 2026Jan 29, 2026

    • amplicon-docs

      Public
      Source for QIIME 2 amplicon documentation.
      Makefile
      •0•1•6•0•Updated Jan 28, 2026Jan 28, 2026

    • gut-to-soil-tutorial

      Public
      The gut-to-soil axis microbiome analysis tutorial
      Makefile
      •3•1•3•0•Updated Jan 28, 2026Jan 28, 2026

    • moving-pictures-tutorial

      Public
      Moving Pictures Tutorial source
      Makefile
      •1•0•0•0•Updated Jan 28, 2026Jan 28, 2026

    • galaxy-tools

      Public
      Official QIIME 2 tools for Galaxy
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5•1•10•3•Updated Jan 28, 2026Jan 28, 2026

    • q2

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jan 27, 2026Jan 27, 2026

    • q2-demux

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •22•1•9•1•Updated Jan 27, 2026Jan 27, 2026

    • q2-emperor

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •21•1•4•0•Updated Jan 27, 2026Jan 27, 2026

    • q2-vizard

      Public
      The first choice of wizard lizards for interactive, generalized microbiome data visualization!
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •13•1•7•2•Updated Jan 27, 2026Jan 27, 2026

    • q2-sample-classifier

      Public
      QIIME 2 plugin for machine learning prediction of sample data.
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •34•6•15•0•Updated Jan 27, 2026Jan 27, 2026

    • q2-deblur

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •20•3•7•1•Updated Jan 27, 2026Jan 27, 2026

    • q2cli

      Public
      Command line interface for QIIME 2
      hacktoberfestq2interface
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •29•19•11•1•Updated Jan 27, 2026Jan 27, 2026

    • q2-feature-table

      Public
      QIIME 2 plugin supporting operations on feature tables.
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •41•2•22•2•Updated Jan 27, 2026Jan 27, 2026

    • q2-quality-filter

      Public
      Quality filtering for QIIME2
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •14•1•3•0•Updated Jan 27, 2026Jan 27, 2026

    • q2-mystery-stew

      Public
      This plugin exists to define integration tests between interfaces and the framework.
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •6•0•0•0•Updated Jan 27, 2026Jan 27, 2026

    • q2-quality-control

      Public
      A QIIME 2 plugin for quality control of sequence and feature data
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •16•4•7•0•Updated Jan 27, 2026Jan 27, 2026

    • q2-taxa

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •29•3•43•0•Updated Jan 27, 2026Jan 27, 2026

    • q2-dada2

      Public
      QIIME 2 plugin wrapping DADA2
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •38•22•11•1•Updated Jan 27, 2026Jan 27, 2026

    • q2-composition

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •28•6•7•1•Updated Jan 27, 2026Jan 27, 2026

    • q2-cutadapt

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •18•4•4•1•Updated Jan 27, 2026Jan 27, 2026

    • q2-alignment

      Public
      Support for multiple sequence alignment in QIIME 2.
      hacktoberfest
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •23•2•6•2•Updated Jan 27, 2026Jan 27, 2026

    • q2-boots

      Public
      q2-boots: bootstrapped and rarefaction-based alpha and beta diversity analyses 🥾
      bootstrapbioinformaticsmicrobiomerarefactionqiime2
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •7•3•8•3•Updated Jan 27, 2026Jan 27, 2026

    • q2-sapienns

      Public
      hacktoberfestqiime2-plugin
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•1•0•Updated Jan 27, 2026Jan 27, 2026

    • q2-vsearch

      Public
      vsearch plugin for QIIME 2
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •21•6•8•0•Updated Jan 27, 2026Jan 27, 2026

    • q2-metadata

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •18•3•6•0•Updated Jan 27, 2026Jan 27, 2026

    • q2-longitudinal

      Public
      QIIME 2 plugin for paired sample comparisons
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •17•9•28•1•Updated Jan 27, 2026Jan 27, 2026

    • q2-phylogeny

      Public
      Phylogenetic reconstruction, and operations on phylogenetic trees.
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •19•5•2•0•Updated Jan 27, 2026Jan 27, 2026